Building user-defined chemistry...
-- The C compiler identification is GNU 8.5.0
-- The CXX compiler identification is GNU 8.5.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- MKLROOT environment variable not found. Will use default MKL paths...
-- Unix (not Apple) OS detected...
-- MODEL_PARAMETERS path: /home/ik3g18/workspace/legacy/dandeliion-server/dandeliion-django/builds/0f6c5ae8-e9eb-4d50-8f2e-476ddb064fce/params
-- MODEL_DISCRETISATION path: /home/ik3g18/workspace/DandeLiion/src/FE
-- Configuring done (0.7s)
-- Generating done (0.0s)
-- Build files have been written to: /home/ik3g18/workspace/legacy/dandeliion-server/dandeliion-django/builds/0f6c5ae8-e9eb-4d50-8f2e-476ddb064fce/build
[  3%] Building CXX object CMakeFiles/daecpp_static.dir/dae-cpp/src/jacobian.cpp.o
[ 10%] Building CXX object CMakeFiles/daecpp_static.dir/dae-cpp/src/solver.cpp.o
[ 10%] Building CXX object CMakeFiles/daecpp_static.dir/dae-cpp/src/debug_output.cpp.o
[ 13%] Building CXX object CMakeFiles/daecpp_static.dir/dae-cpp/src/matrix_checker.cpp.o
[ 16%] Building CXX object CMakeFiles/daecpp_static.dir/dae-cpp/src/mass_matrix.cpp.o
[ 20%] Building CXX object CMakeFiles/daecpp_static.dir/dae-cpp/src/matrix_converter.cpp.o
[ 23%] Building CXX object CMakeFiles/daecpp_static.dir/dae-cpp/src/time_stepper.cpp.o
[ 26%] Building CXX object CMakeFiles/daecpp_static.dir/dae-cpp/src/matrix_add.cpp.o
[ 30%] Building CXX object CMakeFiles/daecpp_static.dir/dae-cpp/src/time_integrator.cpp.o
[ 33%] Building CXX object CMakeFiles/daecpp_static.dir/dae-cpp/src/solver_options.cpp.o
[ 36%] Linking CXX static library libdaecpp_static.a
[ 36%] Built target daecpp_static
[ 40%] Building CXX object CMakeFiles/fullcell-cpp.dir/parameters/DriveCycle/DriveCycle_reader.cpp.o
[ 43%] Building CXX object CMakeFiles/fullcell-cpp.dir/src/FE/fullcell_RHS.cpp.o
[ 46%] Building CXX object CMakeFiles/fullcell-cpp.dir/src/output_paraview.cpp.o
[ 50%] Building CXX object CMakeFiles/fullcell-cpp.dir/src/output.cpp.o
[ 56%] Building CXX object CMakeFiles/fullcell-cpp.dir/src/FE/fullcell_grid.cpp.o
[ 63%] Building CXX object CMakeFiles/fullcell-cpp.dir/src/FE/fullcell_Jacobian.cpp.o
[ 63%] Building CXX object CMakeFiles/fullcell-cpp.dir/src/FE/fullcell_Mass.cpp.o
[ 63%] Building CXX object CMakeFiles/fullcell-cpp.dir/src/fullcell.cpp.o
[ 66%] Building CXX object CMakeFiles/fullcell-cpp.dir/src/initial_conditions.cpp.o
[ 70%] Building CXX object CMakeFiles/fullcell-cpp.dir/src/opt_parser.cpp.o
[ 73%] Building CXX object CMakeFiles/fullcell-cpp.dir/src/output_tecplot.cpp.o
[ 76%] Building CXX object CMakeFiles/fullcell-cpp.dir/src/plotting.cpp.o
[ 80%] Building CXX object CMakeFiles/fullcell-cpp.dir/src/progress_bar.cpp.o
[ 83%] Building CXX object CMakeFiles/fullcell-cpp.dir/src/stop_condition.cpp.o
[ 86%] Building CXX object CMakeFiles/fullcell-cpp.dir/home/ik3g18/workspace/legacy/dandeliion-server/dandeliion-django/builds/0f6c5ae8-e9eb-4d50-8f2e-476ddb064fce/params/Anode_Ueq.cpp.o
[ 90%] Building CXX object CMakeFiles/fullcell-cpp.dir/home/ik3g18/workspace/legacy/dandeliion-server/dandeliion-django/builds/0f6c5ae8-e9eb-4d50-8f2e-476ddb064fce/params/Cathode_Ueq.cpp.o
[ 93%] Building CXX object CMakeFiles/fullcell-cpp.dir/home/ik3g18/workspace/legacy/dandeliion-server/dandeliion-django/builds/0f6c5ae8-e9eb-4d50-8f2e-476ddb064fce/params/Electrolyte_Conductivity.cpp.o
[ 96%] Building CXX object CMakeFiles/fullcell-cpp.dir/home/ik3g18/workspace/legacy/dandeliion-server/dandeliion-django/builds/0f6c5ae8-e9eb-4d50-8f2e-476ddb064fce/params/Electrolyte_Diffusivity.cpp.o
/home/ik3g18/workspace/legacy/dandeliion-server/dandeliion-django/builds/0f6c5ae8-e9eb-4d50-8f2e-476ddb064fce/params/Electrolyte_Diffusivity.cpp: In function ‘double D_of_c_and_T(double, double, double, double)’:
/home/ik3g18/workspace/legacy/dandeliion-server/dandeliion-django/builds/0f6c5ae8-e9eb-4d50-8f2e-476ddb064fce/params/Electrolyte_Diffusivity.cpp:6:12: warning: unused variable ‘x’ [-Wunused-variable]
     double x = 1e-3 * c;  // mol/m^3 to mol/l
            ^
/home/ik3g18/workspace/legacy/dandeliion-server/dandeliion-django/builds/0f6c5ae8-e9eb-4d50-8f2e-476ddb064fce/params/Electrolyte_Conductivity.cpp: In function ‘double kappa_of_c_and_T(double, double, double, double)’:
/home/ik3g18/workspace/legacy/dandeliion-server/dandeliion-django/builds/0f6c5ae8-e9eb-4d50-8f2e-476ddb064fce/params/Electrolyte_Conductivity.cpp:6:12: warning: unused variable ‘x’ [-Wunused-variable]
     double x = 1e-3 * c;  // mol/m^3 to mol/l
            ^
[100%] Linking CXX executable fullcell-cpp
[100%] Built target fullcell-cpp
[ 36%] Built target daecpp_static
[100%] Built target fullcell-cpp
Install the project...
-- Install configuration: "Release"
-- Installing: /home/ik3g18/workspace/legacy/dandeliion-server/dandeliion-django/builds/0f6c5ae8-e9eb-4d50-8f2e-476ddb064fce/build/bin/fullcell-cpp
-- Set runtime path of "/home/ik3g18/workspace/legacy/dandeliion-server/dandeliion-django/builds/0f6c5ae8-e9eb-4d50-8f2e-476ddb064fce/build/bin/fullcell-cpp" to ""
-- Installing: /home/ik3g18/workspace/legacy/dandeliion-server/dandeliion-django/builds/0f6c5ae8-e9eb-4d50-8f2e-476ddb064fce/build/bin/multiplot.plt
-- Installing: /home/ik3g18/workspace/legacy/dandeliion-server/dandeliion-django/builds/0f6c5ae8-e9eb-4d50-8f2e-476ddb064fce/build/bin/multiplot_nokey.plt
-- Installing: /home/ik3g18/workspace/legacy/dandeliion-server/dandeliion-django/builds/0f6c5ae8-e9eb-4d50-8f2e-476ddb064fce/build/bin/parameters.plt
-- Installing: /home/ik3g18/workspace/legacy/dandeliion-server/dandeliion-django/builds/0f6c5ae8-e9eb-4d50-8f2e-476ddb064fce/build/bin/potential_solid.plt
-- Installing: /home/ik3g18/workspace/legacy/dandeliion-server/dandeliion-django/builds/0f6c5ae8-e9eb-4d50-8f2e-476ddb064fce/build/bin/temperature.plt
-- Installing: /home/ik3g18/workspace/legacy/dandeliion-server/dandeliion-django/builds/0f6c5ae8-e9eb-4d50-8f2e-476ddb064fce/build/bin/voltage.plt
-- Installing: /home/ik3g18/workspace/legacy/dandeliion-server/dandeliion-django/builds/0f6c5ae8-e9eb-4d50-8f2e-476ddb064fce/build/bin/anode.txt
-- Installing: /home/ik3g18/workspace/legacy/dandeliion-server/dandeliion-django/builds/0f6c5ae8-e9eb-4d50-8f2e-476ddb064fce/build/bin/cathode.txt
-- Installing: /home/ik3g18/workspace/legacy/dandeliion-server/dandeliion-django/builds/0f6c5ae8-e9eb-4d50-8f2e-476ddb064fce/build/bin/cell.txt
-- Installing: /home/ik3g18/workspace/legacy/dandeliion-server/dandeliion-django/builds/0f6c5ae8-e9eb-4d50-8f2e-476ddb064fce/build/bin/output.txt
-- Installing: /home/ik3g18/workspace/legacy/dandeliion-server/dandeliion-django/builds/0f6c5ae8-e9eb-4d50-8f2e-476ddb064fce/build/bin/separator.txt
-- Installing: /home/ik3g18/workspace/legacy/dandeliion-server/dandeliion-django/builds/0f6c5ae8-e9eb-4d50-8f2e-476ddb064fce/build/bin/rebuild.sh
-- Installing: /home/ik3g18/workspace/legacy/dandeliion-server/dandeliion-django/builds/0f6c5ae8-e9eb-4d50-8f2e-476ddb064fce/build/bin/run_example.sh

Executing...

Full Cell 1D+1D Newman model
============================

Trying to open cell.txt...FOUND
Trying to open anode.txt...FOUND
Trying to open cathode.txt...FOUND
Trying to open separator.txt...FOUND
Trying to open output.txt...FOUND

Battery cells:         1
Grid (Liquid x Solid): 5x3 + 5 + 5x3
Total number of DAEs:  70

(Dis)charge current = 1 A

Output times: 0, t_max = 10 sec.

Float precision:     64 bit
Integer precision:   32 bit
Numerical algorithm: BDF-2
Integration time t = [0, 10]:
Number of equations: 70
munmap_chunk(): invalid pointer
./builds/0f6c5ae8-e9eb-4d50-8f2e-476ddb064fce/build/bin/runner.sh: line 20: 2033642 Aborted                 (core dumped) OMP_NUM_THREADS=$CORES MKL_NUM_THREADS=$CORES ./fullcell-cpp