Building user-defined chemistry... -- The C compiler identification is GNU 8.5.0 -- The CXX compiler identification is GNU 8.5.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- MKLROOT environment variable not found. Will use default MKL paths... -- Unix (not Apple) OS detected... -- MODEL_PARAMETERS path: /home/ik3g18/workspace/dandeliion-server/dandeliion-django/builds/7f7b793e-461d-4e13-be76-8a8a344c5bce/params -- MODEL_DISCRETISATION path: /home/ik3g18/workspace/DandeLiion/src/FV -- Configuring done -- Generating done -- Build files have been written to: /home/ik3g18/workspace/dandeliion-server/dandeliion-django/builds/7f7b793e-461d-4e13-be76-8a8a344c5bce/build [ 13%] Building CXX object CMakeFiles/daecpp_static.dir/dae-cpp/src/jacobian.cpp.o [ 13%] Building CXX object CMakeFiles/daecpp_static.dir/dae-cpp/src/debug_output.cpp.o [ 16%] Building CXX object CMakeFiles/daecpp_static.dir/dae-cpp/src/matrix_add.cpp.o [ 20%] Building CXX object CMakeFiles/daecpp_static.dir/dae-cpp/src/mass_matrix.cpp.o [ 20%] Building CXX object CMakeFiles/daecpp_static.dir/dae-cpp/src/matrix_checker.cpp.o [ 20%] Building CXX object CMakeFiles/daecpp_static.dir/dae-cpp/src/matrix_converter.cpp.o [ 23%] Building CXX object CMakeFiles/daecpp_static.dir/dae-cpp/src/solver.cpp.o [ 26%] Building CXX object CMakeFiles/daecpp_static.dir/dae-cpp/src/solver_options.cpp.o [ 30%] Building CXX object CMakeFiles/daecpp_static.dir/dae-cpp/src/time_stepper.cpp.o [ 33%] Building CXX object CMakeFiles/daecpp_static.dir/dae-cpp/src/time_integrator.cpp.o [ 36%] Linking CXX static library libdaecpp_static.a [ 36%] Built target daecpp_static [ 46%] Building CXX object CMakeFiles/fullcell-cpp.dir/src/FV/fullcell_Mass.cpp.o [ 46%] Building CXX object CMakeFiles/fullcell-cpp.dir/src/FV/fullcell_Jacobian.cpp.o [ 46%] Building CXX object CMakeFiles/fullcell-cpp.dir/parameters/DriveCycle/DriveCycle_reader.cpp.o [ 53%] Building CXX object CMakeFiles/fullcell-cpp.dir/src/FV/fullcell_grid.cpp.o [ 60%] Building CXX object CMakeFiles/fullcell-cpp.dir/src/FV/fullcell_RHS.cpp.o [ 60%] Building CXX object CMakeFiles/fullcell-cpp.dir/src/initial_conditions.cpp.o [ 63%] Building CXX object CMakeFiles/fullcell-cpp.dir/src/fullcell.cpp.o [ 63%] Building CXX object CMakeFiles/fullcell-cpp.dir/src/output_paraview.cpp.o [ 66%] Building CXX object CMakeFiles/fullcell-cpp.dir/src/output.cpp.o [ 70%] Building CXX object CMakeFiles/fullcell-cpp.dir/src/opt_parser.cpp.o [ 73%] Building CXX object CMakeFiles/fullcell-cpp.dir/src/output_tecplot.cpp.o [ 76%] Building CXX object CMakeFiles/fullcell-cpp.dir/src/plotting.cpp.o [ 80%] Building CXX object CMakeFiles/fullcell-cpp.dir/src/progress_bar.cpp.o [ 83%] Building CXX object CMakeFiles/fullcell-cpp.dir/src/stop_condition.cpp.o [ 86%] Building CXX object CMakeFiles/fullcell-cpp.dir/home/ik3g18/workspace/dandeliion-server/dandeliion-django/builds/7f7b793e-461d-4e13-be76-8a8a344c5bce/params/Anode_Ueq.cpp.o [ 90%] Building CXX object CMakeFiles/fullcell-cpp.dir/home/ik3g18/workspace/dandeliion-server/dandeliion-django/builds/7f7b793e-461d-4e13-be76-8a8a344c5bce/params/Cathode_Ueq.cpp.o [ 93%] Building CXX object CMakeFiles/fullcell-cpp.dir/home/ik3g18/workspace/dandeliion-server/dandeliion-django/builds/7f7b793e-461d-4e13-be76-8a8a344c5bce/params/Electrolyte_Conductivity.cpp.o [ 96%] Building CXX object CMakeFiles/fullcell-cpp.dir/home/ik3g18/workspace/dandeliion-server/dandeliion-django/builds/7f7b793e-461d-4e13-be76-8a8a344c5bce/params/Electrolyte_Diffusivity.cpp.o /home/ik3g18/workspace/dandeliion-server/dandeliion-django/builds/7f7b793e-461d-4e13-be76-8a8a344c5bce/params/Electrolyte_Conductivity.cpp: In function ‘double kappa_of_c_and_T(double, double, double, double)’: /home/ik3g18/workspace/dandeliion-server/dandeliion-django/builds/7f7b793e-461d-4e13-be76-8a8a344c5bce/params/Electrolyte_Conductivity.cpp:6:12: warning: unused variable ‘x’ [-Wunused-variable] double x = 1e-3 * c; // mol/m^3 to mol/l ^ [100%] Linking CXX executable fullcell-cpp [100%] Built target fullcell-cpp Consolidate compiler generated dependencies of target daecpp_static [ 36%] Built target daecpp_static Consolidate compiler generated dependencies of target fullcell-cpp [100%] Built target fullcell-cpp Install the project... -- Install configuration: "Release" -- Installing: /home/ik3g18/workspace/dandeliion-server/dandeliion-django/builds/7f7b793e-461d-4e13-be76-8a8a344c5bce/build/bin/fullcell-cpp -- Set runtime path of "/home/ik3g18/workspace/dandeliion-server/dandeliion-django/builds/7f7b793e-461d-4e13-be76-8a8a344c5bce/build/bin/fullcell-cpp" to "" -- Installing: /home/ik3g18/workspace/dandeliion-server/dandeliion-django/builds/7f7b793e-461d-4e13-be76-8a8a344c5bce/build/bin/multiplot.plt -- Installing: /home/ik3g18/workspace/dandeliion-server/dandeliion-django/builds/7f7b793e-461d-4e13-be76-8a8a344c5bce/build/bin/multiplot_nokey.plt -- Installing: /home/ik3g18/workspace/dandeliion-server/dandeliion-django/builds/7f7b793e-461d-4e13-be76-8a8a344c5bce/build/bin/parameters.plt -- Installing: /home/ik3g18/workspace/dandeliion-server/dandeliion-django/builds/7f7b793e-461d-4e13-be76-8a8a344c5bce/build/bin/potential_solid.plt -- Installing: /home/ik3g18/workspace/dandeliion-server/dandeliion-django/builds/7f7b793e-461d-4e13-be76-8a8a344c5bce/build/bin/temperature.plt -- Installing: /home/ik3g18/workspace/dandeliion-server/dandeliion-django/builds/7f7b793e-461d-4e13-be76-8a8a344c5bce/build/bin/voltage.plt -- Installing: /home/ik3g18/workspace/dandeliion-server/dandeliion-django/builds/7f7b793e-461d-4e13-be76-8a8a344c5bce/build/bin/anode.txt -- Installing: /home/ik3g18/workspace/dandeliion-server/dandeliion-django/builds/7f7b793e-461d-4e13-be76-8a8a344c5bce/build/bin/cathode.txt -- Installing: /home/ik3g18/workspace/dandeliion-server/dandeliion-django/builds/7f7b793e-461d-4e13-be76-8a8a344c5bce/build/bin/cell.txt -- Installing: /home/ik3g18/workspace/dandeliion-server/dandeliion-django/builds/7f7b793e-461d-4e13-be76-8a8a344c5bce/build/bin/output.txt -- Installing: /home/ik3g18/workspace/dandeliion-server/dandeliion-django/builds/7f7b793e-461d-4e13-be76-8a8a344c5bce/build/bin/separator.txt -- Installing: /home/ik3g18/workspace/dandeliion-server/dandeliion-django/builds/7f7b793e-461d-4e13-be76-8a8a344c5bce/build/bin/rebuild.sh -- Installing: /home/ik3g18/workspace/dandeliion-server/dandeliion-django/builds/7f7b793e-461d-4e13-be76-8a8a344c5bce/build/bin/run_example.sh Executing...  Full Cell 1D+1D Newman model ============================ Trying to open cell.txt...FOUND Trying to open anode.txt...FOUND Trying to open cathode.txt...FOUND Trying to open separator.txt...FOUND Trying to open output.txt...FOUND  Battery cells: 1 Grid (Liquid x Solid): 49x49 + 31 + 49x49 Total number of DAEs: 5162  (Dis)charge current = -2.52 A  Output times: 0, 500, 1000, 1500, 2000, 2500, 3000, t_max = 4000 sec.  Float precision: 64 bit Integer precision: 32 bit Numerical algorithm: BDF-2 Integration time t = [0, 500]: Number of equations: 5162 Step 1 :: t = 0.1 :: ###> Step 2 :: t = 0.3 :: ##> Step 3 :: t = 0.7 :: ##> Step 4 :: t = 1.5 :: ###> Step 5 :: t = 3.1 :: ###> Step 6 :: t = 6.3 :: ###> Step 7 :: t = 12.7 :: ####> Step 8 :: t = 25.5 :: ####### Step 9 :: t = 38.3 :: ############# Step 10 :: t = 51.1 :: ############ Step 11 :: t = 63.9 :: ############ Step 12 :: t = 76.7 :: ############ Step 13 :: t = 89.5 :: ########### Step 14 :: t = 102.3 :: ########### Step 15 :: t = 115.1 :: ############ Step 16 :: t = 127.9 :: ############ Step 17 :: t = 140.7 :: ######## Step 18 :: t = 153.5 :: ######## Step 19 :: t = 166.3 :: ####### Step 20 :: t = 179.1 :: ###### Step 21 :: t = 191.9 :: #####> Step 22 :: t = 217.5 :: ######### Step 23 :: t = 243.1 :: ######## Step 24 :: t = 268.7 :: ######## Step 25 :: t = 294.3 :: ######## Step 26 :: t = 319.9 :: ####### Step 27 :: t = 345.5 :: ####### Step 28 :: t = 371.1 :: ###### Step 29 :: t = 396.7 :: ###### Step 30 :: t = 422.3 :: ###### Step 31 :: t = 447.9 :: #####> Step 32 :: t = 499.1 :: ######## Step 33 :: t = 500 :: ## Linear algebra solver calls: 236 Peak memory for the linear solver: 4.082 Mb Time spent: by linear algebra solver: 0.272 sec. (60.937%) to calculate the RHS: 0.072 sec. (16.180%) to calculate Jacobian: 0.082 sec. (18.438%) other calculations: 0.020 sec. (4.446%) Total time spent by the solver: 0.447 sec. (100.0%) Integration time t = [500, 1000]: Number of equations: 5162 Step 34 :: t = 551.2 :: ######## Step 35 :: t = 602.4 :: ######## Step 36 :: t = 653.6 :: ######## Step 37 :: t = 704.8 :: ####### Step 38 :: t = 756 :: ############ Step 39 :: t = 807.2 :: ###############< Step 40 :: t = 832.8 :: ### Newton iterations diverged. Review the solver options. Trying to recover... # <- redo Step 40 :: t = 820 :: #### Newton iterations diverged. Review the solver options. Trying to recover... # <- redo Step 40 :: t = 813.6 :: ####### Newton iterations diverged. Review the solver options. Trying to recover... # <- redo Step 40 :: t = 810.4 :: ####> Step 41 :: t = 816.8 :: #### Newton iterations diverged. Review the solver options. Trying to recover... # <- redo Step 41 :: t = 813.6 :: ############# Step 42 :: t = 816.8 :: ## Newton iterations diverged. Review the solver options. Trying to recover... # <- redo Step 42 :: t = 815.2 :: ######## Newton iterations diverged. Review the solver options. Trying to recover... # <- redo Step 42 :: t = 814.4 :: ###### Step 43 :: t = 815.2 :: ####### Step 44 :: t = 816 :: ############ Step 45 :: t = 816.8 :: ## Newton iterations diverged. Review the solver options. Trying to recover... # <- redo Step 45 :: t = 816.4 :: ############ Step 46 :: t = 816.8 :: ### Newton iterations diverged. Review the solver options. Trying to recover... # <- redo Step 46 :: t = 816.6 :: ######### Step 47 :: t = 816.8 :: ############ Newton iterations diverged. Review the solver options. Trying to recover... # <- redo Step 47 :: t = 816.7 :: ###### Step 48 :: t = 816.8 :: ####### Step 49 :: t = 816.9 :: ######## Step 50 :: t = 817 :: ## Newton iterations diverged. Review the solver options. Trying to recover... # <- redo Step 50 :: t = 816.95 :: ###############< Step 51 :: t = 816.975 :: ########## Step 52 :: t = 817 :: ########### Step 53 :: t = 817.025 :: ########## Step 54 :: t = 817.05 :: # Newton iterations diverged. Review the solver options. Trying to recover... # <- redo Step 54 :: t = 817.038 :: ###### Step 55 :: t = 817.05 :: # Newton iterations diverged. Review the solver options. Trying to recover... # <- redo Step 55 :: t = 817.044 :: #### Newton iterations diverged. Review the solver options. Trying to recover... # <- redo Step 55 :: t = 817.041 :: #####> Step 56 :: t = 817.047 :: # Newton iterations diverged. Review the solver options. Trying to recover... # <- redo Step 56 :: t = 817.044 :: ########## Step 57 :: t = 817.047 :: # Newton iterations diverged. Review the solver options. Trying to recover... # <- redo Step 57 :: t = 817.045 :: # Newton iterations diverged. Review the solver options. Trying to recover... # <- redo Step 57 :: t = 817.045 :: # Newton iterations diverged. Review the solver options. Trying to recover... # <- redo Step 57 :: t = 817.044 :: #### Switching current: I = 2.52 A > Step 58 :: t = 817.045 :: # Newton iterations diverged. Review the solver options. Trying to recover... # <- redo Step 58 :: t = 817.045 :: # Newton iterations diverged. Review the solver options. Trying to recover... # <- redo Step 58 :: t = 817.044 :: # Newton iterations diverged. Review the solver options. Trying to recover... # <- redo Step 58 :: t = 817.044 :: ####> Step 59 :: t = 817.044 :: # Newton iterations diverged. Review the solver options. Trying to recover... # <- redo Step 59 :: t = 817.044 :: # Newton iterations diverged. Review the solver options. Trying to recover... # <- redo Step 59 :: t = 817.044 :: ############ Step 60 :: t = 817.044 :: # Newton iterations diverged. Review the solver options. Trying to recover... # <- redo Step 60 :: t = 817.044 :: # Newton iterations diverged. Review the solver options. Trying to recover... # <- redo Step 60 :: t = 817.044 :: # Newton iterations diverged. Review the solver options. Trying to recover... # <- redo Step 60 :: t = 817.044 :: # Newton iterations diverged. Review the solver options. Trying to recover... # <- redo Step 60 :: t = 817.044 :: ####> Step 61 :: t = 817.044 :: # Newton iterations diverged. Review the solver options. Trying to recover... # <- redo Step 61 :: t = 817.044 :: # Newton iterations diverged. Review the solver options. Trying to recover... # <- redo Step 61 :: t = 817.044 :: # Newton iterations diverged. Review the solver options. Trying to recover... # <- redo Step 61 :: t = 817.044 :: ####> Step 62 :: t = 817.044 :: # Newton iterations diverged. Review the solver options. Trying to recover... # <- redo Step 62 :: t = 817.044 :: # Newton iterations diverged. Review the solver options. Trying to recover... # <- redo Step 62 :: t = 817.044 :: ####### Step 63 :: t = 817.044 :: # Newton iterations diverged. Review the solver options. Trying to recover... # <- redo Step 63 :: t = 817.044 :: # Newton iterations diverged. Review the solver options. Trying to recover... # <- redo Step 63 :: t = 817.044 :: ###### Step 64 :: t = 817.044 :: # Newton iterations diverged. Review the solver options. Trying to recover... # <- redo Step 64 :: t = 817.044 :: ###### Step 65 :: t = 817.044 :: # Newton iterations diverged. Review the solver options. Trying to recover... # <- redo Step 65 :: t = 817.044 :: # Newton iterations diverged. Review the solver options. Trying to recover... # <- redo Step 65 :: t = 817.044 :: #####> Step 66 :: t = 817.044 :: Newton iterations diverged. Review the solver options. Trying to recover... # <- redo Step 66 :: t = 817.044 :: Newton iterations diverged. Review the solver options. Trying to recover... # <- redo Step 66 :: t = 817.044 :: Newton iterations diverged. Review the solver options. Trying to recover... # <- redo Step 66 :: t = 817.044 :: Newton iterations diverged. Review the solver options. Trying to recover... # <- redo Step 66 :: t = 817.044 :: Newton iterations diverged. Review the solver options. Trying to recover... # <- redo ERROR: The time step was reduced to 7.45058e-10 but the scheme failed to converge ...FAILED